arXiv — NLP / Computation & Language · · 3 min read

ReportMedSAM: Guiding Segmentation Through Radiology Reports

Mirrored from arXiv — NLP / Computation & Language for archival readability. Support the source by reading on the original site.

Computer Science > Computation and Language

arXiv:2607.14116 (cs)
[Submitted on 8 May 2026]

Title:ReportMedSAM: Guiding Segmentation Through Radiology Reports

View a PDF of the paper titled ReportMedSAM: Guiding Segmentation Through Radiology Reports, by Anghong Du and 4 other authors
View PDF HTML (experimental)
Abstract:Free-form radiology reports contain rich clinical descriptions, yet converting them for reliable segmentation remains challenging due to the inherent variability of natural language. Existing pipelines often rely on predefined organ phrases or brittle rule-based inference-time extraction, which limits their scalability to novel anatomical structures and makes them sensitive to linguistic variations. To address this, we propose ReportMedSAM, a report-driven framework that replaces discrete extraction with a learnable concept bank. By leveraging a frozen medical vision-language encoder (BiomedCLIP), we align organ-level concept embeddings with large-scale clinical corpora through contrastive learning, establishing mutually orthogonal semantic anchors. Our approach explicitly mitigates organ-level semantic collapse and ensures high robustness against diverse clinical synonyms (e.g., "renal" vs. "kidney" ). During inference, a clinical report is embedded and matched against this concept bank to dynamically activate task-specific Mixture-of-Experts (MoE) modules. This decoupled design allows new concepts and experts to be added without retraining existing components, providing a parameter-isolated extension mechanism while keeping previously learned experts unchanged. Evaluated on the AbdomenAtlas 3.0 dataset, ReportMedSAM effectively interprets free-form reports, achieves competitive segmentation accuracy, and demonstrates seamless, non-interfering extension to novel clinical tasks.
Subjects: Computation and Language (cs.CL); Artificial Intelligence (cs.AI); Computer Vision and Pattern Recognition (cs.CV)
Cite as: arXiv:2607.14116 [cs.CL]
  (or arXiv:2607.14116v1 [cs.CL] for this version)
  https://doi.org/10.48550/arXiv.2607.14116
arXiv-issued DOI via DataCite

Submission history

From: Anghong Du [view email]
[v1] Fri, 8 May 2026 13:32:15 UTC (2,937 KB)
Full-text links:

Access Paper:

Current browse context:

cs.CL
< prev   |   next >
Change to browse by:

References & Citations

Loading...

BibTeX formatted citation

loading...
Data provided by:

Bookmark

BibSonomy Reddit
Bibliographic Tools

Bibliographic and Citation Tools

Bibliographic Explorer Toggle
Bibliographic Explorer (What is the Explorer?)
Connected Papers Toggle
Connected Papers (What is Connected Papers?)
Litmaps Toggle
Litmaps (What is Litmaps?)
scite.ai Toggle
scite Smart Citations (What are Smart Citations?)
Code, Data, Media

Code, Data and Media Associated with this Article

alphaXiv Toggle
alphaXiv (What is alphaXiv?)
Links to Code Toggle
CatalyzeX Code Finder for Papers (What is CatalyzeX?)
DagsHub Toggle
DagsHub (What is DagsHub?)
GotitPub Toggle
Gotit.pub (What is GotitPub?)
Huggingface Toggle
Hugging Face (What is Huggingface?)
ScienceCast Toggle
ScienceCast (What is ScienceCast?)
Demos

Demos

Replicate Toggle
Replicate (What is Replicate?)
Spaces Toggle
Hugging Face Spaces (What is Spaces?)
Spaces Toggle
TXYZ.AI (What is TXYZ.AI?)
Related Papers

Recommenders and Search Tools

Link to Influence Flower
Influence Flower (What are Influence Flowers?)
Core recommender toggle
CORE Recommender (What is CORE?)
About arXivLabs

arXivLabs: experimental projects with community collaborators

arXivLabs is a framework that allows collaborators to develop and share new arXiv features directly on our website.

Both individuals and organizations that work with arXivLabs have embraced and accepted our values of openness, community, excellence, and user data privacy. arXiv is committed to these values and only works with partners that adhere to them.

Have an idea for a project that will add value for arXiv's community? Learn more about arXivLabs.

Discussion (0)

Sign in to join the discussion. Free account, 30 seconds — email code or GitHub.

Sign in →

No comments yet. Sign in and be the first to say something.

More from arXiv — NLP / Computation & Language