arXiv — NLP / Computation & Language · · 3 min read

Making LLMs Say What They Think: Measuring and Improving CoT-Interpretability Alignment

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Computer Science > Computation and Language

arXiv:2609.38972 (cs)
[Submitted on 30 Sep 2026]

Title:Making LLMs Say What They Think: Measuring and Improving CoT-Interpretability Alignment

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Abstract:Chain-of-thought (CoT) traces often serve as a proxy for how Large Language Models (LLMs) arrive at their answers. However, growing evidence shows that models' CoT often fails to reflect their internal computations and can be changed without affecting their final answers. In this work, we measure and improve the alignment between the reasoning described in an LLM's CoT and what it computes internally. We propose CoT-Interpretability Alignment (CIA), a metric that measures the agreement between a model's CoT traces and its internal reasoning strategies as detected by interpretability tools. We evaluate CIA on three tasks (two-hop question answering, hint intervention, and integer multiplication) across three LLMs, finding that LLMs exhibit limited alignment across all tasks (44.8-75.9%). We then experiment with improving CIA via post-training, setting both the task accuracy and parametric faithfulness signals as a reward. Experiments show that we can substantially improve CoT parametric faithfulness while maintaining or improving the task accuracy. We provide rich analysis, such as their generalization patterns. Our work provides both a framework for auditing CoT parametric faithfulness and a pathway toward making models' explicit reasoning more trustworthy. Code and data are available at this https URL.
Comments: 28 pages, 9 figures, 10 tables
Subjects: Computation and Language (cs.CL); Artificial Intelligence (cs.AI)
Cite as: arXiv:2609.38972 [cs.CL]
  (or arXiv:2609.38972v1 [cs.CL] for this version)
  https://doi.org/10.48550/arXiv.2609.38972
arXiv-issued DOI via DataCite (pending registration)

Submission history

From: Yihuai Hong [view email]
[v1] Wed, 30 Sep 2026 04:44:26 UTC (322 KB)
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