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Symmetry-Breaking De Novo Crystal Generation via Markovian Jump Diffusion

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Computer Science > Machine Learning

arXiv:2608.13457 (cs)
[Submitted on 13 Aug 2026]

Title:Symmetry-Breaking De Novo Crystal Generation via Markovian Jump Diffusion

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Abstract:Generating crystals has recently attracted significant interest due to their broad applications in materials science. However, existing generative models struggle to produce complete crystallographic specifications, limiting their ability to capture global symmetry and structural dependencies. In particular, current state-of-the-art approaches generate crystals only up to site symmetries and rely on sampling space groups from empirical distributions during generation. Inspired by \emph{spontaneous symmetry breaking} in physics, where crystals break symmetries under external conditions, we propose a novel diffusion-based framework that generates full structure specifications by reversing from the lowest-symmetry priors. Our method leverages a Markovian jump-diffusion process to model these symmetry-breaking dynamics, enabling it to traverse different space groups in a physically motivated manner. Our model, dubbed \emph{Symmetry-breaking Crystal Diffusion} (SbCD), introduces a principled approach to explicitly incorporate inter-space-group transitions into the generative process. In de novo generation experiments on MP20 and MPTS-52, SbCD outperforms its symmetry-preserving counterpart by a substantial margin, offering a promising perspective for generative modeling of crystalline materials.
Comments: Under review
Subjects: Machine Learning (cs.LG)
Cite as: arXiv:2608.13457 [cs.LG]
  (or arXiv:2608.13457v1 [cs.LG] for this version)
  https://doi.org/10.48550/arXiv.2608.13457
arXiv-issued DOI via DataCite (pending registration)

Submission history

From: Van Khoa Nguyen [view email]
[v1] Thu, 13 Aug 2026 16:41:48 UTC (2,552 KB)
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