A Multi-Agent Pipeline for Source-Grounded Synthetic Note Generation from Longitudinal Structured EHR
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Computer Science > Computation and Language
Title:A Multi-Agent Pipeline for Source-Grounded Synthetic Note Generation from Longitudinal Structured EHR
Abstract:Structured EHR is abundant but sparse, coded, and difficult to use directly for note-centric clinical modeling. We present MedNotes, a multi-agent synthetic data generation pipeline that converts longitudinal structured EHR into source-grounded clinical note representations under explicit quality control. MedNotes treats structured-data-to-text synthesis as a closed-loop agentic process: a generator proposes a note, evaluator agents diagnose factual, coverage, structural, and hallucination-related failures, and a router accepts, revises, or rejects the draft. On 1,485 EHRSHOT encounters, MedNotes achieves a 91.4% pass rate, with mean factual accuracy of 0.980, completeness of 99.1%, structural fidelity of 0.761, and 0.028 critical hallucinations per encounter. Iterative refinement improves acceptance from 69.4% to 91.4%. The resulting synthetic corpus improves downstream CPT prediction and paragraph-level section prediction when combined with limited real data.
| Comments: | Accepted at the FMSD Workshop, ICML 2026 |
| Subjects: | Computation and Language (cs.CL); Machine Learning (cs.LG) |
| Cite as: | arXiv:2609.22164 [cs.CL] |
| (or arXiv:2609.22164v1 [cs.CL] for this version) | |
| https://doi.org/10.48550/arXiv.2609.22164
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