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LLM Explainability with Counterfactual Chains and Causal Graphs

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Computer Science > Machine Learning

arXiv:2606.05972 (cs)
[Submitted on 4 Jun 2026]

Title:LLM Explainability with Counterfactual Chains and Causal Graphs

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Abstract:Causal graphs provide a high-level language for making mechanisms transparent. Recent work uses Large Language Models (LLMs) to recover causal graphs of external-world processes. Instead, in this paper, we use causal graphs to model LLM inference itself, providing stakeholders with a transparent view of how the model perceives and organizes high-level concepts to produce a prediction. We propose a four-phase method for constructing such graphs. Given a target LLM and a set of textual examples, our method discovers class-discriminative, human-interpretable concepts and maps each input to LLM-perceived concept states. We then introduce an MCMC-inspired counterfactual augmentation procedure that expands the sparse observational data through chains of counterfactuals. This enables stable causal discovery with $\sigma$-CG, yielding informative, interpretable graphs. We apply our method to three LLMs across disease diagnosis, sentiment analysis, and LLM-as-a-judge classification tasks. We evaluate the learned graphs for predictive fidelity and structural stability, and the MCMC-inspired augmentation for convergence and downstream utility. Our results show that the discovered causal graphs capture meaningful dependencies consistent with LLMs' reasoning. Together, this paper provides a foundation for concept-level explainability of LLMs.
Subjects: Machine Learning (cs.LG)
Cite as: arXiv:2606.05972 [cs.LG]
  (or arXiv:2606.05972v1 [cs.LG] for this version)
  https://doi.org/10.48550/arXiv.2606.05972
arXiv-issued DOI via DataCite (pending registration)

Submission history

From: Nirit Nussbaum-Hoffer [view email]
[v1] Thu, 4 Jun 2026 10:15:12 UTC (4,012 KB)
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